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Supplementary Table 1Supplementary Table 2Supplementary Table 3
**Contributors:** CN, JFS and CJE contributed to the design and coordination of the study and reviewed drafts of the manuscript. AL and KH conducted the statistical analysis and produced the first draft of the manuscript. NP, JB, NJH, KS and DB provided specialist epidemiological input to the study design and helped prepare drafts of the manuscript. All authors read and approved the final manuscript.
**Funding:** This work was supported by the MRC (no. MR/M015386/1).
**Competing interests:** None declared.
**Provenance and peer review:** Not commissioned; externally peer reviewed.
Q:
How to get to a file in a directory, and store it in a variable in Ruby?
In one of my classes, I have a list of files we’re working with and one that we should be working with. I have this directory tree:
dir
|– dir1
|– dir2
|– dir3
|– dir4
|– files
|– file1.jpg
|– file2.jpg
|– newfile.jpg
I need to get to the files directory, but don’t know how.
I do know that I need to store the paths of the file I want in variables in order to use
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Knitr / Sweave / Deprecated Sweave Warning
I’ve built a bunch of Sweave files using newer versions of Sweave and now Knitr is giving me these warnings when I run them:
Running `Sweave()`
> Warning in knit2pdf(.External2(.External(test.tex), file, options)) :
use page = 1, instead of page = 2
> Error: run-time check of PDF page number failed
Running `Sweave()` with verbose=1 and device=’pdf’
Running `Sweave()` with options(evaluate = TRUE)
> Error in open.connection(con, “rb”) :
‘con’ must be of the form ‘type/path/name’
Error in do_require(“graphics”) :
packages ‘grid’ and ‘grDevices’ are locked under dplyr version 1.1.1.
I’m not sure what to make of this. I have a.tex file in a subfolder that I use as my test.tex, so I’d assume that knitr is using that file. How do I go about fixing this issue?
A:
As @sven223 commented, using a compiled LaTeX format and knitting with knitr.yml helped.
Also, I added this line to the top of the Sweave file:
documentclass[pdf,dvipsnames,dvips]{article}
and now the PDF file actually did compile. However, it doesn’t work correctly as I want it to, so I still need to resolve the grid locking issue.
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